Package: countTransformers 0.0.6
countTransformers: Transform Counts in RNA-Seq Data Analysis
Provide data transformation functions to transform counts in RNA-seq data analysis. Please see the reference: Zhang Z, Yu D, Seo M, Hersh CP, Weiss ST, Qiu W. (2019) <doi.org/10.1038/s41598-019-41315-w>.
Authors:
countTransformers_0.0.6.tar.gz
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countTransformers_0.0.6.tgz(r-4.4-any)countTransformers_0.0.6.tgz(r-4.3-any)
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countTransformers.pdf |countTransformers.html✨
countTransformers/json (API)
NEWS
| # Install 'countTransformers' in R: |
| install.packages('countTransformers', repos = c('https://zhang-zeyu.r-universe.dev', 'https://cloud.r-project.org')) |
- es - A Simulated Data Set
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
bioinformaticsdifferentialexpression
Last updated 6 years agofrom:fa9f453dbc. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 29 2024 |
| R-4.5-win | OK | Oct 29 2024 |
| R-4.5-linux | OK | Oct 29 2024 |
| R-4.4-win | OK | Oct 29 2024 |
| R-4.4-mac | OK | Oct 29 2024 |
| R-4.3-win | OK | Oct 29 2024 |
| R-4.3-mac | OK | Oct 29 2024 |
Exports:getJaccardl2TransformerlTransformerlv2TransformerlvTransformerr2TransformerrTransformerrv2TransformerrvTransformerwilcoxWrapper
Dependencies:BiobaseBiocGenericslimmaMASSstatmod
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A Simulated Data Set | es |
| Calculate Jaccard Index for Two Binary Vectors | getJaccard |
| Log Based Count Transformation Minimizing Sum of Sample-Specific Squared Difference | l2Transformer |
| Log-based transformation | lTransformer |
| Log and VOOM Based Count Transformation Minimizing Sum of Sample-Specific Squared Difference | lv2Transformer |
| Log and VOOM Transformation | lvTransformer |
| Root Based Count Transformation Minimizing Sum of Sample-Specific Squared Difference | r2Transformer |
| Root Based Transformation | rTransformer |
| Root and VOOM Based Count Transformation Minimizing Sum of Sample-Specific Squared Difference | rv2Transformer |
| Root and VOOM Transformation | rvTransformer |
| Wrapper Function for Wilcoxon Rank Sum Test | wilcoxWrapper |
